PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 245aa    MW: 27399.9 Da    PI: 6.5378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-084489554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +  rEr RRd++N+ f eL   l ++     +K +Ka+iL  +++ +k+L
  XP_009138406.1 44 KADRERIRRDKLNEQFLELGNALDPN----RPKSDKASILIDTIQTLKDL 89
                    5689*******************997....79************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.363989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-54293No hitNo description
SuperFamilySSF474593.14E-1343109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-64489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-74595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1247110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEQTKKLKTS SEFSLSDESS ASSSSIRPEK MVEVKKEPVS SLKKADRERI RRDKLNEQFL  60
ELGNALDPNR PKSDKASILI DTIQTLKDLM TQVDRLKAEH VTLSQESREL IQEKSELREE  120
KTSLKSDIDI LNAQYQHRVR TMVPWIPHYP YPVPLVAITQ CPVSTLPFPL YGTRNPAPLP  180
SPSSTFMPYS AEQKDDAGLE LELKIHASSS GQEDVYGKEK KGNLTNTASS SNSYSSSQAV  240
SDGVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138406.11e-180PREDICTED: transcription factor bHLH11
SwissprotQ8W2F23e-87BH011_ARATH; Transcription factor bHLH11
TrEMBLM4DML01e-180M4DML0_BRARP; Uncharacterized protein
STRINGBra017745.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.21e-86bHLH family protein